About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_84615_84831_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
84615 - 84831
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
CAGGAATGGATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
ATTTTCAGAAAG
Flanking Amino Acid:
LAKKHKNIGTAGN
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
71.5
33.2
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
46.6
-0.1
1.1
35.1
39.8
Minor 5ss
42.9
-0.8
2.5
50.7
40.2
Minor BPS
48.7
-0.2
1.9
61.08
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020067
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045646
84604 - 85072
469