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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8465731_8465908_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8465731 - 8465908
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTCATTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTTCTAGTT
Flanking Amino Acid:
MWSLGVITYILLCGFPPFYS
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85.6
0.8
0.8
79.9
32.1
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
55.3
0.24
1.8
79.83
36.7

Associated Gene:

Gene:
MAPKAPK3
Ensembl Gene ID:
ENSAPLG00000016332
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038489
8424502 - 8472708
48207
ENSAPLT00000033285
8366903 - 8472708
105806
ENSAPLT00000017050
8424898 - 8472708
47811