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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8637572_8645896_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8637572 - 8645896
Intron Length:
8325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TCTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATTCTTTAACT
Flanking Amino Acid:
EEKDFVLKVYTCNNENEWCQ
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
77.5
32.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.3
0.82
0.7
85.7
27.2
Minor 5ss
32
-2.1
2.7
35.9
33.5
Minor BPS
89.6
1.32
0.8
97.26
26.6

Associated Gene:

Gene:
DOCK3
Ensembl Gene ID:
ENSAPLG00000002255
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002356
8536078 - 8692775
156698