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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8645986_8649147_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8645986 - 8649147
Intron Length:
3162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
AAAAAATGAACA
Flanking Amino Acid:
TKYTAPSSNYGLIISLQLLR
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
44.3
-0.4
1.8
52.97
37.4

Associated Gene:

Gene:
DOCK3
Ensembl Gene ID:
ENSAPLG00000002255
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002356
8536078 - 8692775
156698