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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8664420_8664965_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8664420 - 8664965
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
TCTCCTGCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
AACTCCTTATTT
Flanking Amino Acid:
HLRFEFRHCSTKDKGEKKLF
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
65.2
34.5
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
78.4
0.64
0.8
72
32.6
Minor 5ss
29.7
-2.3
3.1
38.1
40.6
Minor BPS
65.1
0.55
1.6
75.44
41.6

Associated Gene:

Gene:
DOCK3
Ensembl Gene ID:
ENSAPLG00000002255
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002356
8536078 - 8692775
156698