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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8668842_8670173_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8668842 - 8670173
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TCATTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTATTT
Flanking Amino Acid:
QKHFAGALAYKELIRCLKWY
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
81.6
33.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.7
0.76
0.8
81.3
35.1
Minor 5ss
46.5
-0.4
3.1
66.5
39
Minor BPS
62.4
0.47
1.9
82.13
39.2

Associated Gene:

Gene:
DOCK3
Ensembl Gene ID:
ENSAPLG00000002255
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002356
8536078 - 8692775
156698