About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8685815_8687809_F


Intron Information:

Intron Rank:
22

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
8685815 - 8687809

Intron Length:
1995

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACAACAG

5'SS Class:
major

3'SS Sequence:
TTCCTTGCAATAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTCCT

U12 Branch Point Sequence:
TTTCCTTGCAAT

Flanking Amino Acid:
DNFQSKDELKEFLLKIFCVF

Intron Amino Acid Position:
890

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.6
0.46
1.1
56
43

Major BPS
39.5
-0.6
4.3
85.7
34.9

Major PPT
69.1
0.43
0.9
65.9
34.7

Minor 5ss
29.6
-2.3
3.3
38.4
46.6

Minor BPS
49
0
2
75.71
40.6

Associated Gene:

Gene:
DOCK3

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

8536078 - 8692775
156698