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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8788445_8789652_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8788445 - 8789652
Intron Length:
1208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCCATCTGATTT
Flanking Amino Acid:
YLTPLGEYQELLPIFMQLGS
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
83.2
30.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
82.1
0.72
0.8
80.7
36.6
Minor 5ss
37.5
-1.4
3
48.1
47.6
Minor BPS
46.7
-0.1
1.7
60.54
43.7

Associated Gene:

Gene:
DCAF1
Ensembl Gene ID:
ENSAPLG00000015002
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015689
8769972 - 8800262
30291
ENSAPLT00000015684
8765944 - 8800262
34319