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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8829618_8830130_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8829618 - 8830130
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAGCAATTAATT
Flanking Amino Acid:
VGPTGSGKTKSYEVLAAAMT
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.1
39.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.7
0.71
0.8
75.8
32.6
Minor 5ss
46.4
-0.4
3.1
63.6
48.1
Minor BPS
51.4
0.12
1.8
69.31
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024349
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024851
8824618 - 8830700
6083