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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8830223_8830339_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8830223 - 8830339
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
TCTTCCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TCTTCCTCTACA
Flanking Amino Acid:
CIKKNLKDVDGFVTKCIQLY
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
60.5
40.3
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
86.1
0.81
0.7
80.3
25.2
Minor 5ss
23.6
-3
3.3
29
43.5
Minor BPS
63.3
0.41
1.9
75.86
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024349
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024851
8824618 - 8830700
6083