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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8830527_8830619_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8830527 - 8830619
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTACTTCAC
5'SS Class:
weak_major
3'SS Sequence:
TAAATCTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AAATTCTTAAAT
Flanking Amino Acid:
NPTMDEVGVLDLICLRAIRD
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.8
0.11
1.2
51
39.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.5
0.62
0.9
73.9
40.9
Minor 5ss
36.1
-1.6
3.2
49.8
40.9
Minor BPS
69.5
0.69
1.3
77.93
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024349
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024851
8824618 - 8830700
6083