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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8831350_8831682_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8831350 - 8831682
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTATGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTGTTGGAACT
Flanking Amino Acid:
GRTELPDNLKALFRPVAMMV
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
76.3
0.59
1
72.8
41.9
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
46.2
-0.2
2.1
68.54
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024668
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039576
8831164 - 8834282
3119