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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8831797_8832871_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8831797 - 8832871
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACATTTTTCATT
Flanking Amino Acid:
TTIQKAQQQRVDRFMFEGME
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.4
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
84.3
0.77
0.7
77.4
36.6
Minor 5ss
35.6
-1.6
2.7
37.5
40.1
Minor BPS
50.5
0.1
1.7
65.81
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024668
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039576
8831164 - 8834282
3119