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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8856594_8857806_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8856594 - 8857806
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTGTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATCTTGTAACA
Flanking Amino Acid:
LHTPKLKKEKRVLDCMACLE
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74
0.54
1
69.5
40.2
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
53.9
0.12
2
69.28
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027846
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034011
8856425 - 8860668
4244