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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8858060_8858572_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8858060 - 8858572
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ACTTCTGTAAAC
Flanking Amino Acid:
PILNGGKTPEGRAPLLSCQY
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
80.1
28.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
84
0.76
0.8
76.7
37.1
Minor 5ss
45.4
-0.5
2.7
60.6
44.5
Minor BPS
51.6
0.03
2.1
65.5
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027846
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034011
8856425 - 8860668
4244