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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8859827_8860584_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8859827 - 8860584
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTGGCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CAAGACTTAATT
Flanking Amino Acid:
PVFPTYLPLKIFDDEEYDCR
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
72.6
0.51
0.9
69
37.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
55.6
0.25
1.7
66.88
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027846
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034011
8856425 - 8860668
4244