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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8917784_8919715_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8917784 - 8919715
Intron Length:
1932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGGTTG
5'SS Class:
major
3'SS Sequence:
CTTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAA
U12 Branch Point Sequence:
TCCTAGTGAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.3
63
43.8
Major BPS
64.3
0.35
1.2
55.4
42
Major PPT
86.7
0.83
0.7
81
24.1
Minor 5ss
41.8
-0.9
3.1
55.5
48.8
Minor BPS
46.4
-0.2
2.3
60.88
45

Associated Gene:

Gene:
GLYCTK
Ensembl Gene ID:
ENSAPLG00000026434
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033843
8912740 - 8921261
8522