About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8919822_8920862_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8919822 - 8920862
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTCATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
100
1.24
0.5
100
0
Major PPT
86.4
0.82
0.7
78.3
35.1
Minor 5ss
38.8
-1.3
3
53.4
43.7
Minor BPS
56.6
0.29
1.8
77.97
38.7

Associated Gene:

Gene:
GLYCTK
Ensembl Gene ID:
ENSAPLG00000026434
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033843
8912740 - 8921261
8522