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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8935446_8935647_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8935446 - 8935647
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
CTGTCTTTGAGG
Flanking Amino Acid:
YIRYFPGHTKRVVALSMSPV
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
81.7
0.71
0.9
76.2
37.8
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
53.6
-0
1.8
57.48
45

Associated Gene:

Gene:
WDR82
Ensembl Gene ID:
ENSAPLG00000010146
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010636
8926595 - 8941460
14866