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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8938437_8938859_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8938437 - 8938859
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
TTTTGTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TCTACCATATAT
Flanking Amino Acid:
FKGAVLHTFGGYNNSKAVTL
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
62.3
43.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
78.2
0.63
0.9
72.5
37.8
Minor 5ss
33.8
-1.8
2.8
32.9
41.7
Minor BPS
48.5
-0
2
71.22
45

Associated Gene:

Gene:
WDR82
Ensembl Gene ID:
ENSAPLG00000010146
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010636
8926595 - 8941460
14866