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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8938930_8940063_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8938930 - 8940063
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TGTTTTTCCACT
Flanking Amino Acid:
FTPDSQFIMIGSEDGKIHVW
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
74.1
0.54
0.8
68.8
31.6
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
52.2
0.15
2
76.21
40.7

Associated Gene:

Gene:
WDR82
Ensembl Gene ID:
ENSAPLG00000010146
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010636
8926595 - 8941460
14866