Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8947237_8948113_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8947237 - 8948113

Intron Length:

877

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGTTCAA

5'SS Class:

major

3'SS Sequence:

TCTTTGGGGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

ACGTTCTTATAT

Flanking Amino Acid:

YPLVHGHGKQARLLGTLAVS

Intron Amino Acid Position:

306

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.1

40.2

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

63.2

0.3

1.2

57.2

47.5

Minor 5ss

32.2

-2

3.1

40.8

45.4

Minor BPS

52.9

0.17

1.7

66.83

Associated Gene:

Gene:

PPM1M

Ensembl Gene ID:

ENSAPLG00000010830

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011303

8946058 - 8952419

6362