About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8948754_8949045_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8948754 - 8949045
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACCTAT
U12 Branch Point Sequence:
GCCCACCTATCC
Flanking Amino Acid:
ETERQRLQHLAFLFPKLLDG
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
49.4
-0
1.2
48.1
37.3
Major PPT
83.5
0.75
0.7
81.1
24.1
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
41
-0.7
2
46.37
42

Associated Gene:

Gene:
PPM1M
Ensembl Gene ID:
ENSAPLG00000010830
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011303
8946058 - 8952419
6362