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Intron Name: Anas_platyrhynchos_platyrhynchos_13_8949847_8950201_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
8949847 - 8950201

Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGC|GTGAGTTCT

5'SS Class:
major

3'SS Sequence:
TTTAAACCAACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ATTTAAA

U12 Branch Point Sequence:
TCATTCTGAACT

Flanking Amino Acid:
GALENAFQECDEVIGQEMEA

Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
66.6
0.39
1.3
68.4
39.3

Major BPS
81.6
0.78
0.8
82
24.9

Major PPT
66.8
0.38
1
60.2
40.3

Minor 5ss
38.3
-1.3
2.9
46.2
42.2

Minor BPS
70.3
0.72
1.4
81.41
40

Associated Gene:

Gene:
PPM1M

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

8946058 - 8952419
6362