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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8952294_8952344_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8952294 - 8952344
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTTGGGG
5'SS Class:
weak_major
3'SS Sequence:
CCTCAGGGAGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCCGAA
U12 Branch Point Sequence:
GCTGCCTCAGGG
Flanking Amino Acid:
GKPRTGRPQKRGRGQGRLVP
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.2
0.15
1.2
45.3
42.4
Major BPS
50.7
0.02
1.2
50.2
36.7
Major PPT
42.3
-0.4
1.7
38.5
38.5
Minor 5ss
31.1
-2.2
3.3
39.1
46.2
Minor BPS
41.6
-0.7
2.1
43.99
47.5

Associated Gene:

Gene:
PPM1M
Ensembl Gene ID:
ENSAPLG00000010830
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011303
8946058 - 8952419
6362