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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8980132_8980264_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8980132 - 8980264
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCGTGAG
U12 Branch Point Sequence:
AGCGCCGTGAGC
Flanking Amino Acid:
SHEGDYLESVVFIYSMPGYK
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.8
38
Major BPS
43
-0.4
1.6
34.4
42.4
Major PPT
86.3
0.82
0.7
84.1
23.9
Minor 5ss
29.6
-2.3
2.8
36.4
40.6
Minor BPS
41.5
-0.6
2.3
48.01
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026327
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028078
8979263 - 8981254
1992