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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8988592_8989067_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8988592 - 8989067
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTTTTTTGAATT
Flanking Amino Acid:
HCPSHIIPVRVADAAKNTEI
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
82.3
0.73
0.9
78.9
38.5
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
67.2
0.62
1.3
80.96
34.8

Associated Gene:

Gene:
ALAS1
Ensembl Gene ID:
ENSAPLG00000009917
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010328
8987579 - 8994620
7042