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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8992436_8992528_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8992436 - 8992528
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
CAAATCATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTCATTTCAAAT
Flanking Amino Acid:
SHLLQDNLPKSVSTFQYDQF
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76
28.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
68.1
0.41
1
63.1
42.3
Minor 5ss
39.7
-1.2
3.1
51.8
45.1
Minor BPS
47.8
-0
1.6
62.5
41.5

Associated Gene:

Gene:
ALAS1
Ensembl Gene ID:
ENSAPLG00000009917
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010328
8987579 - 8994620
7042