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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_8992682_8993618_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8992682 - 8993618
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGATGTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTCACCATAATT
Flanking Amino Acid:
DVKEMQADRKGKEFANVTTS
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72
0.5
0.9
66.3
40.6
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
58.6
0.35
1.7
73.41
43.7

Associated Gene:

Gene:
ALAS1
Ensembl Gene ID:
ENSAPLG00000009917
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010328
8987579 - 8994620
7042