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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9023472_9024221_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9023472 - 9024221
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ACCTTCTTATTT
Flanking Amino Acid:
ELWADIKSILTNPRSLKHLC
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.3
0.77
0.7
77.7
35.7
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
58.2
0.33
1.6
69.06
42.8

Associated Gene:

Gene:
ASB14
Ensembl Gene ID:
ENSAPLG00000009911
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010314
9023278 - 9030846
7569