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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9024376_9025597_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9024376 - 9025597
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTATTAAAT
Flanking Amino Acid:
WTSTVIKDTMFCEVITLSWL
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.1
0.83
0.6
85.7
21.4
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
64.7
0.54
1.7
82.05
39.1

Associated Gene:

Gene:
ASB14
Ensembl Gene ID:
ENSAPLG00000009911
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010314
9023278 - 9030846
7569