About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9026754_9028210_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9026754 - 9028210
Intron Length:
1457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
AAATCCTCGATG
Flanking Amino Acid:
TEIMELLLQKGADVLSQAMD
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
86.5
0.82
0.7
84.4
30.6
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
52.2
-0
1.6
54.81
40.3

Associated Gene:

Gene:
ASB14
Ensembl Gene ID:
ENSAPLG00000009911
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010314
9023278 - 9030846
7569