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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9028457_9029579_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9028457 - 9029579
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAATATC
5'SS Class:
strong_major
3'SS Sequence:
TTTAATCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
NEEGDSPLVVAIKYNSYEIA
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
83.7
27.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.6
0.76
0.8
76.9
36.9
Minor 5ss
34.2
-1.8
2.9
44.9
43.2
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
ASB14
Ensembl Gene ID:
ENSAPLG00000009911
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010314
9023278 - 9030846
7569