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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9029739_9029834_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9029739 - 9029834
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAC
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
NMNILEITFKASRAATWEQT
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
75.1
40.7
Major BPS
64.2
0.35
1
60.7
37.6
Major PPT
83.8
0.76
0.8
81.4
35
Minor 5ss
40.1
-1.1
3.2
57.4
46.9
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
ASB14
Ensembl Gene ID:
ENSAPLG00000009911
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010314
9023278 - 9030846
7569