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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9029930_9030664_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9029930 - 9030664
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCCTTGTTT
5'SS Class:
weak_major
3'SS Sequence:
TGGTGAACCATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
AGGTCCTGAAGA
Flanking Amino Acid:
FCVLLALLCTCSAFEEADQQ
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.3
0.01
1.3
52.5
44.4
Major BPS
69.6
0.49
1
59.5
39
Major PPT
56
0.14
1
48.1
39.6
Minor 5ss
34.1
-1.8
4.3
52.8
46.3
Minor BPS
55.1
0.16
1.8
63.63
42.3

Associated Gene:

Gene:
ASB14
Ensembl Gene ID:
ENSAPLG00000009911
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010314
9023278 - 9030846
7569