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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9040430_9040923_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9040430 - 9040923
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGATA
5'SS Class:
major
3'SS Sequence:
TTATTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AGTTTATTAATA
Flanking Amino Acid:
PIDLLGYEFQVIPQDTADTA
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
72.2
38.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.3
0.8
0.7
81.7
30
Minor 5ss
34.1
-1.8
3.5
48.2
47.5
Minor BPS
63.9
0.43
1.5
71.5
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009244
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035517
9038504 - 9049743
11240