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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9041422_9042436_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9041422 - 9042436
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTTTTTCAG
5'SS Class:
weak_major
3'SS Sequence:
AATTAACCTGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTAATCCGAACT
Flanking Amino Acid:
VTQTTPLSEDKAIKGLVVMD
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.3
48.4
41.5
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
57.7
0.17
1.1
55.1
39.5
Minor 5ss
38.5
-1.3
2.7
46.9
41.7
Minor BPS
52.2
0.15
1.8
75.49
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009244
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035517
9038504 - 9049743
11240