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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9043265_9043690_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9043265 - 9043690
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTTACTGTATTT
Flanking Amino Acid:
TYEDYIQFIKNLPFSQEPEV
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.4
0.59
0.9
69.7
41.2
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
46.1
-0.2
2.2
67.7
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009244
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021388
9038504 - 9049123
10620
ENSAPLT00000009680
9042488 - 9056274
13787
ENSAPLT00000035517
9038504 - 9049743
11240