Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9043925_9044750_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9043925 - 9044750

Intron Length:

826

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATCA

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTGTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAA

U12 Branch Point Sequence:

GATATTTCAAGT

Flanking Amino Acid:

DLRISIRQLQLFINEYSHVP

Intron Amino Acid Position:

748

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

0.9

73.8

30.8

Major BPS

0.79

0.8

83.7

25.7

Major PPT

82.9

0.74

0.9

80.2

37.3

Minor 5ss

37.6

-1.4

3.1

48.6

47.1

Minor BPS

46.9

-0.1

1.8

62.46

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009244

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035517

9038504 - 9049743

11240

ENSAPLT00000021388

9038504 - 9049123

10620

ENSAPLT00000009680

9042488 - 9056274

13787