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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9050737_9051229_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9050737 - 9051229
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CTCACCTTATTT
Flanking Amino Acid:
VNLFINSIHDSNKSKILEKR
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
82
0.72
0.7
81.3
30.7
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
59
0.36
1.7
72.13
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009244
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009680
9042488 - 9056274
13787