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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9051403_9052372_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9051403 - 9052372
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTGATATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CAAACTTGAAAT
Flanking Amino Acid:
MANEITKKQQVAEKTELKIA
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
69.3
0.44
1
63.7
41.8
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
48.7
-0
1.6
61.31
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009244
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009680
9042488 - 9056274
13787