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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9052566_9053423_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9052566 - 9053423
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTC
Flanking Amino Acid:
QLLGIVVAKERPELEEERNI
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
85.3
32.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.6
0.89
0.7
89.2
26.3
Minor 5ss
38.9
-1.2
3.1
53.5
43.9
Minor BPS
72.6
0.69
1.5
81.59
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009244
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009680
9042488 - 9056274
13787