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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9054416_9055430_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9054416 - 9055430
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTGAC
5'SS Class:
major
3'SS Sequence:
TTGTATATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTATAT
Flanking Amino Acid:
NGVIVENSRRWPLMIDPQGQ
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.5
36.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75.2
0.57
0.9
67.2
43.4
Minor 5ss
31.7
-2.1
3.4
39.3
41.1
Minor BPS
48
-0
2.3
76.11
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009244
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009680
9042488 - 9056274
13787