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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9081593_9082523_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9081593 - 9082523
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGATCT
5'SS Class:
major
3'SS Sequence:
GTCTGTTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTTCTATAAAC
Flanking Amino Acid:
PLTDRCYRTLIGAFYLNLGG
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
69.6
35.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
71.5
0.48
0.8
69.4
36.9
Minor 5ss
46.8
-0.3
2.8
62.8
42.8
Minor BPS
62.9
0.38
1.7
75.26
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022134
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023919
9079457 - 9083644
4188