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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9083100_9083524_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9083100 - 9083524
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTATGC
5'SS Class:
major
3'SS Sequence:
TTGTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AGTTTCATAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
59.9
40.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
86.7
0.83
0.8
80.5
37
Minor 5ss
37.3
-1.4
3.2
51.5
45
Minor BPS
65
0.55
1.6
79.91
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022134
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023919
9079457 - 9083644
4188