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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9090007_9090554_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9090007 - 9090554
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACTA
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TATTTCTCAAGA
Flanking Amino Acid:
EYSELDCMQQYVADVRALQK
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
73.4
37.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
41.6
-0.9
3.1
56.3
47.8
Minor BPS
59.8
0.3
1.8
72.46
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018261
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039547
9088721 - 9100896
12176