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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9093763_9094031_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9093763 - 9094031
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTCTTTTGAAG
Flanking Amino Acid:
EQHSFGEYTTFIDEFFTLEK
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
35.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
77.8
0.63
1
79.1
33.2
Minor 5ss
43.4
-0.7
2.8
60.6
43.7
Minor BPS
56.6
0.06
1.5
64.42
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018261
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039547
9088721 - 9100896
12176