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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9094124_9094223_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9094124 - 9094223
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGAATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATTTCTTGAATT
Flanking Amino Acid:
EGPKEYFENYVEKYGWLVDG
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
77.5
0.62
0.9
70.6
38.9
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
74.4
0.84
1.3
87.23
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018261
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039547
9088721 - 9100896
12176