Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9095545_9096196_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9095545 - 9096196

Intron Length:

652

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATATG

5'SS Class:

strong_major

3'SS Sequence:

TTTTATGATCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

GTTCTTTCAACT

Flanking Amino Acid:

SCVATLMINQLKEFLRRNVE

Intron Amino Acid Position:

271

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

84.2

33.9

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

73.8

0.54

66.8

43.9

Minor 5ss

38.7

-1.3

2.9

50.6

45.9

Minor BPS

0.46

1.5

78.21

37.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018261

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039547

9088721 - 9100896

12176