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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9097211_9097984_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9097211 - 9097984
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTGTTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTTGTTTATT
Flanking Amino Acid:
EEEAPLPLLPLGLDFSRPWH
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
63.2
36.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.2
0.81
0.8
85.4
34.3
Minor 5ss
29.2
-2.4
3.2
36.9
41.8
Minor BPS
49.7
0.06
2.3
75.86
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018261
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039547
9088721 - 9100896
12176